BEAST (current) on XSEDE 1.10.4/1.10.5pre Bayesian Evolutionary Analysis by Sampling Trees - run on XSEDE Remco Boukaert, Alexei Drummond, Andrew Rambaut, and Marc A. Suchard Drummond, A. J. and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7:214. Suchard, M.A. and A. Rambaut. 2009. Many-Core algorithms for statistical phylogenetics. Bioinformatics XX:1-9. Phylogeny / Alignment beast_tg beast105_comet perl $which_beast == 105 && !$is_cloudeligible perl "" 0 beast105_comet_cloud perl $which_beast == 105 && $is_cloudeligible perl "" 0 beast104_comet perl $which_beast == 104 && !$is_cloudeligible perl "" 0 beast104_comet_cloud perl $which_beast == 104 && $is_cloudeligible perl "" 0 number_nodes_patlt3000 2 scheduler.conf perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 7 && $nu_patterns < 3000 && !$datatype && !$more_memory perl "ChargeFactor=1.0\\n" . "mem=6G\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=3\\n" partitions_17_patlt3000 perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 7 && $nu_patterns < 3000 && !$datatype && !$more_memory perl "-beagle_SSE -beagle_thread_count 3 " 4 number_nodes_1_7b104 2 scheduler.conf perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 7 && $nu_patterns > 2999 && $nu_patterns < 80000 && !$datatype && !$more_memory perl "ChargeFactor=1.0\\n" . "mem=90G\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" number_nodes_1_7b104b 2 scheduler.conf perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 9 && $nu_patterns > 79999 && !$datatype perl "ChargeFactor=1.0\\n" . "mem=90G\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "--res=path-testing\\n" . "threads_per_process=1\\n" partitions_1_7b104 perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 7 && $nu_patterns > 2999 && !$datatype && !$more_memory perl "-threads 1 -beagle_GPU -beagle_cuda" 4 number_nodes_10a104 2 scheduler.conf perl $which_beast >= 104 && $nu_patterns < 10000 && $nu_partitions >= 8 && !$datatype && !$more_memory perl "ChargeFactor=1.0\\n" . "mem=6G\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=3\\n" partitions_10a104 perl $which_beast >= 104 && $nu_patterns < 10000 && $nu_partitions >= 8 && !$datatype && !$more_memory perl "-beagle_SSE -beagle_thread_count 3" 4 number_nodes_10b104 2 scheduler.conf perl $which_beast >= 104 && $nu_patterns > 9999 && $nu_partitions >= 8 && !$datatype && !$more_memory perl "ChargeFactor=1.0\\n" . "mem=8G\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_10b104 perl $which_beast >= 104 && $nu_patterns > 9999 && $nu_partitions >= 8 && !$datatype && !$more_memory perl "-beagle_SSE -beagle_thread_count 4" 4 number_nodes_patlt10000_more 2 scheduler.conf perl $which_beast >= 104 && !$datatype && $more_memory perl "ChargeFactor=1.0\\n" . "mem=12G\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=6\\n" allpartitions_hmem perl $which_beast >= 104 && !$datatype && $more_memory perl "-beagle_SSE -beagle_thread_count 6 " 4 number_nodes_protein_1 2 scheduler.conf perl $datatype perl "ChargeFactor=1.0\\n" . "mem=90G\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_protein_1 perl $datatype perl "-threads 1 -beagle_GPU -beagle_cuda" 4 infile Input File (must be in BEAST XML format) perl "infile.xml" 99 infile.xml all_results * which_beast Which Version of BEAST do you wish to run? 104 105 104 Please choose a BEAST version perl !defined $which_beast Sorry, you cant turn off BEAGLE for BEAST version 1.10 and above. perl $which_beast > 4 && $no_beagle 4 This option is offered because sometimes a bug in the interface between BEAST and BEAGLE prevents a run from completing. Use this option if you wish to run a data set that has failed using the normal BEAST/BEAGLE implementation. Runs made this way are always slower, so use this option as a last resort. no_beagle Do not use Beagle 0 The Do not use Beagle option is intended only for cases when runs with Beagle fail. Runs without Beagle are slower and less efficient. perl $no_beagle == 1 4 This option is offered because sometimes a bug in the interface between BEAST and BEAGLE prevents a run from completing. Use this option if you wish to run a data set that has failed using the normal BEAST/BEAGLE implementation. Runs made this way are always slower, so use this option as a last resort. runtime 1 scheduler.conf Maximum Hours to Run (up to 168 hours for non-gpu; 120 for gpu jobs) 0.5 The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $which_beast >= 104 && $nu_partitions <= 9 && $nu_patterns > 9999 && !$datatype The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast >= 104 && $nu_patterns < 10000 && !$datatype The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast >= 104 && $nu_partitions > 9 && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $datatype && $which_beast >= 104 The maximum hours to run must be greater than 0.05 perl $runtime < 0.05 perl "runhours=$value\\n" The job will run on 3 processors as configured. If it runs for the entire configured time, it will consume 3 X $runtime cpu hours perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 7 && $nu_patterns < 3000 && !$datatype && !$more_memory The job will run on 1 processors and 1 GPU as configured. If it runs for the entire configured time, it will consume 20 X $runtime cpu hours perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 7 && $nu_patterns > 2999 && !$datatype && !$more_memory The job will run on 3 processors as configured. If it runs for the entire configured time, it will consume 3 X $runtime cpu hours perl $which_beast >= 104 && $nu_patterns < 10000 && $nu_partitions >= 8 && !$datatype && !$more_memory The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast >= 104 && $nu_patterns > 9999 && $nu_partitions >= 8 && !$datatype The job will run on 6 processors as configured. If it runs for the entire configured time, it will consume 6 X $runtime cpu hours perl $which_beast >= 104 && !$datatype && $more_memory The job will run on 1 processors and 1 GPU as configured. If it runs for the entire configured time, it will consume 20 X $runtime cpu hours perl $which_beast >= 104 && $datatype Estimate the maximum time your job will need to run. We recommend testimg initially with a < 0.5hr test run because Jobs set for 0.5 h or less dependably run immediately in the "debug" queue. Once you are sure the configuration is correct, you then increase the time. The reason is that jobs > 0.5 h are submitted to the "normal" queue, where jobs configured for 1 or a few hours times may run sooner than jobs configured for the full 168 hours. datatype My data set is Amino Acid Sequences 0 4 Protein sequences require a slightly different configuration than DNA sequences nu_partitions 0 How many partitions does your data have? 1 Please enter an integer for the number of partitions. perl !defined $nu_partitions The number of partitions must be greater than 1 perl $nu_partitions < 1 This option will help the application determine how to run the job nu_patterns 0 How many patterns does your data set have? Please enter an integer greater than 1 for the number of patterns. perl $nu_patterns < 2 Please enter an integer for the number of partitions. perl $nu_patterns < 1 This option will help the application determine how to run the job. You can estimate by giving the number of characters, or take the value from the BEAUTi file. codon_partitioning 0 My data set uses codon partitioning 0 This option will help the application determine how to run the job path_sampling 0 This is a Path Sampling analysis For Path Sampling, your input data must specify: rootdir \= ./tmp/step, where the .\/ is required. The actual directory names given (tmp/step in this example) are arbitary, and can be anything linux accepts perl $path_sampling This option will help the application determine how to run the job spec_seed Specify a seed for this run (by default a random seed is used) 0 4 This option allows the user to specify the random seed BEAST uses, so results can be compared between runs. save_everyval How often do we save to file? (-save_every) perl $which_beast > 102 perl "-save_every $value" 100000 Please enter the number of generations to save after (save_every) perl !defined $save_everyval 4 save_statefile Provide a name for the saved state file (-save_state) perl $which_beast > 102 perl "-save_state $value" saved_state Please enter a name for the saved state file (save_state) perl !defined $save_statefile 4 seed_val Enter the seed value here perl $spec_seed perl "-seed $value" 12345 4 beagle_scaling Set the Beagle Scaling Parameter (the choice can affect performance) perl !$no_beagle perl "-beagle_scaling dynamic" 4 more_memory My run ran out of memory; I need more. perl $which_beast >= 104 && $nu_patterns < 3000 && !$datatype tree_uploads Extra trees file upload tree_file Add a tree file (this must be specified by manually editing your BEAUTi file) treefile.trees 4 treefile1 Please select your second treefile (will be named treefile1.trees) treefile1.trees treefile2 Please select your third treefile (will be named treefile2.trees) perl defined $treefile1 treefile2.trees treefile3 Please select your fourth treefile (will be named treefile3.trees) perl defined $treefile2 treefile3.trees treefile4 Please select your fifth extra treefile (will be named treefile4.trees) perl defined $treefile3 treefile4.trees treefile5 Please select your sixth extra treefile (will be named treefile5.trees) perl defined $treefile4 treefile5.trees treefile6 Please select your seventh extra treefile (will be named treefile6.trees) perl defined $treefile5 treefile6.trees treefile7 Please select your eighth treefile (will be named treefile7.trees) perl defined $treefile6 treefile7.trees treefile8 Please select your ninth treefile (will be named treefile8.trees) perl defined $treefile7 treefile8.trees treefile9 Please select your tenth treefile (will be named treefile9.trees) perl defined $treefile8 treefile9.trees treefile10 Please select your eleventh treefile (will be named treefile10.trees) perl defined $treefile9 treefile10.trees treefile11 Please select your twelfth treefile (will be named treefile11.trees) perl defined $treefile10 treefile11.trees treefile12 Please select your thirteenth treefile (will be named treefile12.trees) perl defined $treefile11 treefile12.trees treefile13 Please select your fourteenth treefile (will be named treefile13.trees) perl defined $treefile12 treefile13.trees treefile14 Please select your fifteenth treefile (will be named treefile14.trees) perl defined $treefile13 treefile14.trees treefile15 Please select your sixteenth treefile (will be named treefile15.trees) perl defined $treefile14 treefile15.trees treefile16 Please select your seventeenth treefile (will be named treefile16.trees) perl defined $treefile15 treefile16.trees treefile17 Please select your eighteenth treefile (will be named treefile17.trees) perl defined $treefile16 treefile17.trees treefile18 Please select your nineteenth treefile (will be named treefile18.trees) perl defined $treefile17 treefile18.trees treefile19 Please select your twentieth treefile (will be named treefile19.trees) perl defined $treefile18 treefile19.trees treefile20 Please select your twenty-first treefile (will be named treefile20.trees) perl defined $treefile19 treefile20.trees treefile21 Please select your twenty-second treefile (will be named treefile21.trees) treefile21.trees perl defined $treefile20 treefile22 Please select your twenty-third treefile (will be named treefile22.trees) perl defined $treefile21 treefile22.trees treefile23 Please select your twenty-fourth treefile (will be named treefile23.trees) perl defined $treefile22 treefile23.trees treefile24 Please select your twenty-fifth treefile (will be named treefile24.trees) perl defined $treefile23 treefile24.trees treefile25 Please select your twenty-sixth treefile (will be named treefile25.trees) perl defined $treefile24 treefile25.trees treefile26 Please select your twenty-seventh treefile (will be named treefile26.trees) perl defined $treefile25 treefile26.trees treefile27 Please select your twenty-eighth treefile (will be named treefile27.trees) perl defined $treefile26 treefile27.trees treefile28 Please select your twenty-ninth treefile (will be named treefile28.trees) perl defined $treefile27 treefile28.trees treefile29 Please select your thirtieth treefile (will be named treefile29.trees) perl defined $treefile28 treefile29.trees treefile30 Please select your thirty-first treefile (will be named treefile30.trees) perl defined $treefile29 treefile30.trees treefile31 Please select your thirty-second treefile (will be named treefile31.trees) perl defined $treefile30 treefile31.trees treefile32 Please select your thirty-third treefile (will be named treefile32.trees) perl defined $treefile31 treefile32.trees treefile33 Please select your thirty-fourth treefile (will be named treefile33.trees) perl defined $treefile32 treefile33.trees treefile34 Please select your thirty-fifth treefile (will be named treefile34.trees) perl defined $treefile33 treefile34.trees treefile35 Please select your thirty-sixth treefile (will be named treefile35.trees) perl defined $treefile34 treefile35.trees treefile36 Please select your thirty-seventh treefile (will be named treefile36.trees) perl defined $treefile35 treefile36.trees treefile37 Please select your thirty-eighth treefile (will be named treefile37.trees) perl defined $treefile36 treefile37.trees treefile38 Please select your thirty-ninth treefile (will be named treefile38.trees) perl defined $treefile37 treefile38.trees treefile39 Please select your fortieth treefile (will be named treefile39.trees) perl defined $treefile38 treefile39.trees treefile40 Please select your forty-first treefile (will be named treefile40.trees) perl defined $treefile39 treefile40.trees treefile41 Please select your forty-second treefile (will be named treefile41.trees) perl defined $treefile40 treefile41.trees treefile42 Please select your forty-third treefile (will be named treefile42.trees) perl defined $treefile41 treefile42.trees treefile43 Please select your forty-fourth treefile (will be named treefile43.trees) perl defined $treefile42 treefile43.trees treefile44 Please select your forty-fifth treefile (will be named treefile44.trees) perl defined $treefile43 treefile44.trees treefile45 Please select your forty-sixth treefile (will be named treefile45.trees) perl defined $treefile44 treefile45.trees treefile46 Please select your forty-seventh treefile (will be named treefile46.trees) perl defined $treefile45 treefile46.trees treefile47 Please select your forty-eighth treefile (will be named treefile47.trees) perl defined $treefile46 treefile47.trees treefile48 Please select your forty-ninth treefile (will be named treefile48.trees) perl defined $treefile47 treefile48.trees treefile49 Please select your fiftieth treefile (will be named treefile49.trees) perl defined $treefile48 treefile49.trees treefile50 Please select your fifty-first treefile (will be named treefile50.trees) perl defined $treefile49 treefile50.trees treefile51 Please select your fifty-second treefile (will be named treefile51.trees) perl defined $treefile50 treefile51.trees treefile52 Please select your fifty-third treefile (will be named treefile52.trees) perl defined $treefile51 treefile52.trees treefile53 Please select your fifty-fourth treefile (will be named treefile53.trees) perl defined $treefile52 treefile53.trees treefile54 Please select your fifty-fifth treefile (will be named treefile54.trees) perl defined $treefile53 treefile54.trees treefile55 Please select your fifty-sixth treefile (will be named treefile55.trees) perl defined $treefile54 treefile55.trees treefile56 Please select your fifty-seventh treefile (will be named treefile56.trees) perl defined $treefile55 treefile56.trees treefile57 Please select your fifty-eighth treefile (will be named treefile57.trees) perl defined $treefile56 treefile57.trees treefile58 Please select your fifty-ninth treefile (will be named treefile58.trees) perl defined $treefile57 treefile58.trees treefile59 Please select your sixtieth treefile (will be named treefile59.trees) perl defined $treefile58 treefile59.trees treefile60 Please select your sixty-first treefile (will be named treefile60.trees) perl defined $treefile59 treefile60.trees treefile61 Please select your sixty-second treefile (will be named treefile61.trees) perl defined $treefile60 treefile61.trees treefile62 Please select your sixty-third treefile (will be named treefile62.trees) perl defined $treefile61 treefile62.trees treefile63 Please select your sixty-fourth treefile (will be named treefile63.trees) perl defined $treefile62 treefile63.trees treefile64 Please select your sixty-fifth treefile (will be named treefile64.trees) perl defined $treefile63 treefile64.trees treefile65 Please select your sixty-sixth treefile (will be named treefile65.trees) perl defined $treefile64 treefile65.trees treefile66 Please select your sixty-seventh treefile (will be named treefile66.trees) perl defined $treefile65 treefile66.trees treefile67 Please select your sixty-eighth treefile (will be named treefile67.trees) perl defined $treefile66 treefile67.trees treefile68 Please select your sixty-ninth treefile (will be named treefile68.trees) perl defined $treefile67 treefile68.trees treefile69 Please select your seventieth treefile (will be named treefile69.trees) perl defined $treefile68 treefile69.trees treefile70 Please select your seventy-first treefile (will be named treefile70.trees) perl defined $treefile69 treefile70.trees treefile71 Please select your seventy-second treefile (will be named treefile71.trees) perl defined $treefile70 treefile71.trees treefile72 Please select your seventy-third treefile (will be named treefile72.trees) perl defined $treefile71 treefile72.trees treefile73 Please select your seventy-fourth treefile (will be named treefile73.trees) perl defined $treefile72 treefile73.trees treefile74 Please select your seventy-fifth treefile (will be named treefile74.trees) perl defined $treefile73 treefile74.trees treefile75 Please select your seventy-sixth treefile (will be named treefile75.trees) perl defined $treefile74 treefile75.trees treefile76 Please select your seventy-seventh treefile (will be named treefile76.trees) perl defined $treefile75 treefile76.trees treefile77 Please select your seventy-eighth treefile (will be named treefile77.trees) perl defined $treefile76 treefile77.trees treefile78 Please select your seventy-ninth treefile (will be named treefile78.trees) perl defined $treefile77 treefile78.trees treefile79 Please select your eightieth treefile (will be named treefile79.trees) perl defined $treefile78 treefile79.trees treefile80 Please select your eighty-first treefile (will be named treefile80.trees) perl defined $treefile79 treefile80.trees treefile81 Please select your eighty-second treefile (will be named treefile81.trees) perl defined $treefile80 treefile81.trees treefile82 Please select your eighty-third treefile (will be named treefile82.trees) perl defined $treefile81 treefile82.trees treefile83 Please select your eighty-fourth treefile (will be named treefile83.trees) perl defined $treefile82 treefile83.trees treefile84 Please select your eighty-fifth treefile (will be named treefile84.trees) perl defined $treefile83 treefile84.trees treefile85 Please select your eighty-sixth treefile (will be named treefile85.trees) perl defined $treefile84 treefile85.trees treefile86 Please select your eighty-seventh treefile (will be named treefile86.trees) perl defined $treefile85 treefile86.trees treefile87 Please select your eighty-eighth treefile (will be named treefile87.trees) perl defined $treefile86 treefile87.trees treefile88 Please select your eighty-ninth treefile (will be named treefile88.trees) perl defined $treefile87 treefile88.trees treefile89 Please select your nintieth treefile (will be named treefile89.trees) perl defined $treefile88 treefile89.trees treefile90 Please select your ninety-first treefile (will be named treefile90.trees) perl defined $treefile89 treefile90.trees treefile91 Please select your ninety-second treefile (will be named treefile91.trees) perl defined $treefile90 treefile91.trees treefile92 Please select your ninety-third treefile (will be named treefile92.trees) perl defined $treefile91 treefile92.trees treefile93 Please select your ninety-fourth treefile (will be named treefile93.trees) perl defined $treefile92 treefile93.trees treefile94 Please select your ninety-fifth treefile (will be named treefile94.trees) perl defined $treefile93 treefile94.trees treefile95 Please select your ninety-sixth treefile (will be named treefile95.trees) perl defined $treefile94 treefile95.trees treefile96 Please select your ninety-seventh treefile (will be named treefile96.trees) perl defined $treefile95 treefile96.trees treefile97 Please select your ninety-eighth treefile (will be named treefile97.trees) perl defined $treefile96 treefile97.trees treefile98 Please select your ninety-ninth treefile (will be named treefile98.trees) perl defined $treefile97 treefile98.trees treefile99 Please select your one hundredth treefile (will be named treefile99.trees) perl defined $treefile98 treefile99.trees treefile100 Please select your one hundred first treefile (will be named treefile100.trees) perl defined $treefile99 treefile100.trees treefile101 Please select your one hundred second treefile (will be named treefile101.trees) perl defined $treefile100 treefile101.trees treefile102 Please select your one hundred third treefile (will be named treefile102.trees) perl defined $treefile101 treefile102.trees treefile103 Please select your one hundred fourth treefile (will be named treefile103.trees) perl defined $treefile102 treefile103.trees treefile104 Please select your one hundred fifth treefile (will be named treefile104.trees) perl defined $treefile103 treefile104.trees treefile105 Please select your one hundred sixth treefile (will be named treefile105.trees) perl defined $treefile104 treefile105.trees treefile106 Please select your one hundred seventh treefile (will be named treefile106.trees) perl defined $treefile105 treefile106.trees treefile107 Please select your one hundred eighth treefile (will be named treefile107.trees) perl defined $treefile106 treefile107.trees treefile108 Please select your one hundred ninth treefile (will be named treefile108.trees) perl defined $treefile107 treefile108.trees treefile109 Please select your one hundred tenth treefile (will be named treefile109.trees) perl defined $treefile108 treefile109.trees treefile110 Please select your one hundred eleventh treefile (will be named treefile110.trees) perl defined $treefile109 treefile110.trees treefile111 Please select your one hundred twelfth treefile (will be named treefile111.trees) perl defined $treefile110 treefile111.trees treefile112 Please select your one hundred thirteenth treefile (will be named treefile112.trees) perl defined $treefile111 treefile112.trees treefile113 Please select your one hundred fourteenth treefile (will be named treefile113.trees) perl defined $treefile112 treefile113.trees treefile114 Please select your one hundred fifteenth treefile (will be named treefile114.trees) perl defined $treefile113 treefile114.trees treefile115 Please select your one hundred sixteenth treefile (will be named treefile115.trees) perl defined $treefile114 treefile115.trees treefile116 Please select your one hundred seventeenth treefile (will be named treefile116.trees) perl defined $treefile115 treefile116.trees treefile117 Please select your one hundred eighteenth treefile (will be named treefile117.trees) perl defined $treefile116 treefile117.trees treefile118 Please select your one hundred nineteenth treefile (will be named treefile118.trees) perl defined $treefile117 treefile118.trees treefile119 Please select your one hundred twentieth treefile (will be named treefile119.trees) perl defined $treefile118 treefile119.trees treefile120 Please select your one hundred twenty-first treefile (will be named treefile120.trees) perl defined $treefile119 treefile120.trees treefile121 Please select your one hundred twenty-second treefile (will be named treefile121.trees) perl defined $treefile120 treefile121.trees treefile122 Please select your one hundred twenty-third treefile (will be named treefile122.trees) perl defined $treefile121 treefile122.trees treefile123 Please select your one hundred twenty-fourth treefile (will be named treefile123.trees) perl defined $treefile122 treefile123.trees treefile124 Please select your one hundred twenty-fifth treefile (will be named treefile124.trees) perl defined $treefile123 treefile124.trees treefile125 Please select your one hundred twenty-sixth treefile (will be named treefile125.trees) perl defined $treefile124 treefile125.trees treefile126 Please select your one hundred twenty-seventh treefile (will be named treefile126.trees) perl defined $treefile125 treefile126.trees treefile127 Please select your one hundred twenty-eighth treefile (will be named treefile127.trees) perl defined $treefile126 treefile127.trees treefile128 Please select your one hundred twenty-ninth treefile (will be named treefile128.trees) perl defined $treefile127 treefile128.trees treefile129 Please select your one hundred thirtieth treefile (will be named treefile129.trees) perl defined $treefile128 treefile129.trees treefile130 Please select your one hundred thirty-first treefile (will be named treefile130.trees) perl defined $treefile129 treefile130.trees treefile131 Please select your one hundred thirty-second treefile (will be named treefile131.trees) perl defined $treefile130 treefile131.trees treefile132 Please select your one hundred thirty-third treefile (will be named treefile132.trees) perl defined $treefile131 treefile132.trees treefile133 Please select your one hundred thirty-fourth treefile (will be named treefile133.trees) perl defined $treefile132 treefile133.trees treefile134 Please select your one hundred thirty-fifth treefile (will be named treefile134.trees) perl defined $treefile133 treefile134.trees treefile135 Please select your one hundred thirty-sixth treefile (will be named treefile135.trees) perl defined $treefile134 treefile135.trees treefile136 Please select your one hundred thirty-seventh treefile (will be named treefile136.trees) perl defined $treefile135 treefile136.trees treefile137 Please select your one hundred thirty-eighth treefile (will be named treefile137.trees) perl defined $treefile136 treefile137.trees treefile138 Please select your one hundred thirty-ninth treefile (will be named treefile138.trees) perl defined $treefile137 treefile138.trees treefile139 Please select your one hundred fortieth treefile (will be named treefile139.trees) perl defined $treefile138 treefile139.trees treefile140 Please select your one hundred forty-first treefile (will be named treefile140.trees) perl defined $treefile139 treefile140.trees treefile141 Please select your one hundred forty-second treefile (will be named treefile141.trees) perl defined $treefile140 treefile141.trees treefile142 Please select your one hundred forty-third treefile (will be named treefile142.trees) perl defined $treefile141 treefile142.trees treefile143 Please select your one hundred forty-fourth treefile (will be named treefile143.trees) perl defined $treefile142 treefile143.trees treefile144 Please select your one hundred forty-fifth treefile (will be named treefile144.trees) perl defined $treefile143 treefile144.trees treefile145 Please select your one hundred forty-sixth treefile (will be named treefile145.trees) perl defined $treefile144 treefile145.trees treefile146 Please select your one hundred forty-seventh treefile (will be named treefile146.trees) perl defined $treefile145 treefile146.trees treefile147 Please select your one hundred forty-eighth treefile (will be named treefile147.trees) perl defined $treefile146 treefile147.trees treefile148 Please select your one hundred forty-ninth treefile (will be named treefile148.trees) perl defined $treefile147 treefile148.trees treefile149 Please select your one hundred fiftieth treefile (will be named treefile149.trees) perl defined $treefile148 treefile149.trees treefile150 Please select your one hundred fifty-first treefile (will be named treefile150.trees) perl defined $treefile149 treefile150.trees treefile151 Please select your one hundred fifty-second treefile (will be named treefile151.trees) perl defined $treefile150 treefile151.trees restart perl ($value) ? "-load_state $save_statefile -force_resume" : "" 4 is_cloudeligible perl "" 0 4