ASTRAL_XSEDE
ASTRAL 5.15.4: Coalescent-based species tree estimation run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/ASTRAL_XSEDE
tool
ASTRAL_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/ASTRAL_XSEDE/doc/pise
Pise XML
ASTRAL_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/ASTRAL_XSEDE/doc/portal2
Html Web Page
ASTRAL_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/ASTRAL_XSEDE/doc/example
Html Web Page
ASTRAL_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/ASTRAL_XSEDE/doc/param
Html Web Page
ASTRAL_XSEDE type
BALI_PHY3_XSEDE
Bali-Phy, estimates multiple sequence alignments and evolutionary trees from DNA, amino acid, or codon sequences
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BALI_PHY3_XSEDE
tool
BALI_PHY3_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BALI_PHY3_XSEDE/doc/pise
Pise XML
BALI_PHY3_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BALI_PHY3_XSEDE/doc/portal2
Html Web Page
BALI_PHY3_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BALI_PHY3_XSEDE/doc/example
Html Web Page
BALI_PHY3_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BALI_PHY3_XSEDE/doc/param
Html Web Page
BALI_PHY3_XSEDE type
BEAST2_XSEDE
BEAST2 v2.6.6: Bayesian Evolutionary Analysis by Sampling Trees
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST2_XSEDE
tool
BEAST2_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST2_XSEDE/doc/pise
Pise XML
BEAST2_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST2_XSEDE/doc/portal2
Html Web Page
BEAST2_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST2_XSEDE/doc/example
Html Web Page
BEAST2_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST2_XSEDE/doc/param
Html Web Page
BEAST2_XSEDE type
BEAST_TG
BEAST v1.10.4+: Bayesian Evolutionary Analysis by Sampling Trees
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG
tool
BEAST_TG
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG/doc/pise
Pise XML
BEAST_TG pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG/doc/portal2
Html Web Page
BEAST_TG type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG/doc/example
Html Web Page
BEAST_TG type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG/doc/param
Html Web Page
BEAST_TG type
BEAST_TG18
BEAST v1.8.4: Bayesian Evolutionary Analysis by Sampling Trees
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG18
tool
BEAST_TG18
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG18/doc/pise
Pise XML
BEAST_TG18 pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG18/doc/portal2
Html Web Page
BEAST_TG18 type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG18/doc/example
Html Web Page
BEAST_TG18 type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BEAST_TG18/doc/param
Html Web Page
BEAST_TG18 type
BLASTN
BLAST-N, using threading on a full node for performance
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BLASTN
tool
BLASTN
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BLASTN/doc/pise
Pise XML
BLASTN pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BLASTN/doc/portal2
Html Web Page
BLASTN type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BLASTN/doc/example
Html Web Page
BLASTN type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BLASTN/doc/param
Html Web Page
BLASTN type
BWA_XSEDE
BWA: Mapping low-divergent sequences against a large reference genome.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BWA_XSEDE
tool
BWA_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BWA_XSEDE/doc/pise
Pise XML
BWA_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BWA_XSEDE/doc/portal2
Html Web Page
BWA_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BWA_XSEDE/doc/example
Html Web Page
BWA_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/BWA_XSEDE/doc/param
Html Web Page
BWA_XSEDE type
CLANN_EXPANSE
CLANN 4.2.5: Supertree Inference
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLANN_EXPANSE
tool
CLANN_EXPANSE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLANN_EXPANSE/doc/pise
Pise XML
CLANN_EXPANSE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLANN_EXPANSE/doc/portal2
Html Web Page
CLANN_EXPANSE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLANN_EXPANSE/doc/example
Html Web Page
CLANN_EXPANSE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLANN_EXPANSE/doc/param
Html Web Page
CLANN_EXPANSE type
CLEARCUT
Clearcut v1.0.9: Rapid, relaxed neighbor joining
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLEARCUT
tool
CLEARCUT
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLEARCUT/doc/pise
Pise XML
CLEARCUT pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLEARCUT/doc/portal2
Html Web Page
CLEARCUT type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLEARCUT/doc/example
Html Web Page
CLEARCUT type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLEARCUT/doc/param
Html Web Page
CLEARCUT type
CLUSTALW
ClustalW v2.1: Create multiple sequence alignments
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLUSTALW
tool
CLUSTALW
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLUSTALW/doc/pise
Pise XML
CLUSTALW pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLUSTALW/doc/portal2
Html Web Page
CLUSTALW type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLUSTALW/doc/example
Html Web Page
CLUSTALW type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CLUSTALW/doc/param
Html Web Page
CLUSTALW type
CONSENSE
Consense v3.66: Calculate consensus trees (Phylip)
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CONSENSE
tool
CONSENSE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CONSENSE/doc/pise
Pise XML
CONSENSE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CONSENSE/doc/portal2
Html Web Page
CONSENSE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CONSENSE/doc/example
Html Web Page
CONSENSE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CONSENSE/doc/param
Html Web Page
CONSENSE type
CUTADAPT_XSEDE
CUTADAP V 3.4, Remove adapter sequences from high-throughput sequencing reads
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CUTADAPT_XSEDE
tool
CUTADAPT_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CUTADAPT_XSEDE/doc/pise
Pise XML
CUTADAPT_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CUTADAPT_XSEDE/doc/portal2
Html Web Page
CUTADAPT_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CUTADAPT_XSEDE/doc/example
Html Web Page
CUTADAPT_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/CUTADAPT_XSEDE/doc/param
Html Web Page
CUTADAPT_XSEDE type
DIVVIER_XSEDE
Divvier v1.0: Address MSA uncertainty and error with software run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/DIVVIER_XSEDE
tool
DIVVIER_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/DIVVIER_XSEDE/doc/pise
Pise XML
DIVVIER_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/DIVVIER_XSEDE/doc/portal2
Html Web Page
DIVVIER_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/DIVVIER_XSEDE/doc/example
Html Web Page
DIVVIER_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/DIVVIER_XSEDE/doc/param
Html Web Page
DIVVIER_XSEDE type
EPA_NG_XSEDE
EPA NG 0.3.7: Tree inference using evolutionary placement algorithm on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EPA_NG_XSEDE
tool
EPA_NG_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EPA_NG_XSEDE/doc/pise
Pise XML
EPA_NG_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EPA_NG_XSEDE/doc/portal2
Html Web Page
EPA_NG_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EPA_NG_XSEDE/doc/example
Html Web Page
EPA_NG_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EPA_NG_XSEDE/doc/param
Html Web Page
EPA_NG_XSEDE type
EXABAYES_XSEDE
ExaBayes v1.5.1: Tree inference using bayesian on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EXABAYES_XSEDE
tool
EXABAYES_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EXABAYES_XSEDE/doc/pise
Pise XML
EXABAYES_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EXABAYES_XSEDE/doc/portal2
Html Web Page
EXABAYES_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EXABAYES_XSEDE/doc/example
Html Web Page
EXABAYES_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/EXABAYES_XSEDE/doc/param
Html Web Page
EXABAYES_XSEDE type
FASTML_XSEDE
FastML v3.1.1: Rapid tree inference using neighbor joining on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTML_XSEDE
tool
FASTML_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTML_XSEDE/doc/pise
Pise XML
FASTML_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTML_XSEDE/doc/portal2
Html Web Page
FASTML_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTML_XSEDE/doc/example
Html Web Page
FASTML_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTML_XSEDE/doc/param
Html Web Page
FASTML_XSEDE type
FASTTREE_XSEDE
FastTree2 v2.1.10: Rapid tree inference using neighbor joining on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTTREE_XSEDE
tool
FASTTREE_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTTREE_XSEDE/doc/pise
Pise XML
FASTTREE_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTTREE_XSEDE/doc/portal2
Html Web Page
FASTTREE_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTTREE_XSEDE/doc/example
Html Web Page
FASTTREE_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/FASTTREE_XSEDE/doc/param
Html Web Page
FASTTREE_XSEDE type
GARLI2_TGB
GARLI v2.10: Genetic algorithm, maximum likelihood inference for large datasets, run on Teragrid
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI2_TGB
tool
GARLI2_TGB
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI2_TGB/doc/pise
Pise XML
GARLI2_TGB pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI2_TGB/doc/portal2
Html Web Page
GARLI2_TGB type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI2_TGB/doc/example
Html Web Page
GARLI2_TGB type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI2_TGB/doc/param
Html Web Page
GARLI2_TGB type
GARLI_CONF_CREATOR
GARLI.conf Creator: Creates garli.conf files
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI_CONF_CREATOR
tool
GARLI_CONF_CREATOR
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI_CONF_CREATOR/doc/pise
Pise XML
GARLI_CONF_CREATOR pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI_CONF_CREATOR/doc/portal2
Html Web Page
GARLI_CONF_CREATOR type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI_CONF_CREATOR/doc/example
Html Web Page
GARLI_CONF_CREATOR type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GARLI_CONF_CREATOR/doc/param
Html Web Page
GARLI_CONF_CREATOR type
GATK_XSEDE
A flexible read trimming tool for Illumina NGS data.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GATK_XSEDE
tool
GATK_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GATK_XSEDE/doc/pise
Pise XML
GATK_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GATK_XSEDE/doc/portal2
Html Web Page
GATK_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GATK_XSEDE/doc/example
Html Web Page
GATK_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GATK_XSEDE/doc/param
Html Web Page
GATK_XSEDE type
GBLOCKS_XSEDE
GBLOCK v0.91b. Selection of conserved blocks from multiple alignments for phylogenetic analysis
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GBLOCKS_XSEDE
tool
GBLOCKS_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GBLOCKS_XSEDE/doc/pise
Pise XML
GBLOCKS_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GBLOCKS_XSEDE/doc/portal2
Html Web Page
GBLOCKS_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GBLOCKS_XSEDE/doc/example
Html Web Page
GBLOCKS_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GBLOCKS_XSEDE/doc/param
Html Web Page
GBLOCKS_XSEDE type
GENETREE_XSEDE
GENETREE, v.8.3 Estimation of mutation, migration and growth rates, and ancestral inference
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GENETREE_XSEDE
tool
GENETREE_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GENETREE_XSEDE/doc/pise
Pise XML
GENETREE_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GENETREE_XSEDE/doc/portal2
Html Web Page
GENETREE_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GENETREE_XSEDE/doc/example
Html Web Page
GENETREE_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GENETREE_XSEDE/doc/param
Html Web Page
GENETREE_XSEDE type
GPHOCS_XSEDE
G-PHOCS v1.3.2 Bayesian inference of ancient human demography from individual genome sequences
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GPHOCS_XSEDE
tool
GPHOCS_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GPHOCS_XSEDE/doc/pise
Pise XML
GPHOCS_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GPHOCS_XSEDE/doc/portal2
Html Web Page
GPHOCS_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GPHOCS_XSEDE/doc/example
Html Web Page
GPHOCS_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GPHOCS_XSEDE/doc/param
Html Web Page
GPHOCS_XSEDE type
GUIDANCE2_XSEDE
Guidance2 v2.0.2 Accurate detection of unreliable alignment regions.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GUIDANCE2_XSEDE
tool
GUIDANCE2_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GUIDANCE2_XSEDE/doc/pise
Pise XML
GUIDANCE2_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GUIDANCE2_XSEDE/doc/portal2
Html Web Page
GUIDANCE2_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GUIDANCE2_XSEDE/doc/example
Html Web Page
GUIDANCE2_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/GUIDANCE2_XSEDE/doc/param
Html Web Page
GUIDANCE2_XSEDE type
IMA3_XSEDE
IMa3p v.1.11. Efficient phylogenomic software by maximum likelihood, run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMA3_XSEDE
tool
IMA3_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMA3_XSEDE/doc/pise
Pise XML
IMA3_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMA3_XSEDE/doc/portal2
Html Web Page
IMA3_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMA3_XSEDE/doc/example
Html Web Page
IMA3_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMA3_XSEDE/doc/param
Html Web Page
IMA3_XSEDE type
IMGC_XSEDE
IMGC v.1.0. Efficient phylogenomic software by maximum likelihood, run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMGC_XSEDE
tool
IMGC_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMGC_XSEDE/doc/pise
Pise XML
IMGC_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMGC_XSEDE/doc/portal2
Html Web Page
IMGC_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMGC_XSEDE/doc/example
Html Web Page
IMGC_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IMGC_XSEDE/doc/param
Html Web Page
IMGC_XSEDE type
IQTREE_GENEIOUS
IQTree v.2.2.2.7 Efficient phylogenomic software by maximum likelihood, run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_GENEIOUS
tool
IQTREE_GENEIOUS
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_GENEIOUS/doc/pise
Pise XML
IQTREE_GENEIOUS pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_GENEIOUS/doc/portal2
Html Web Page
IQTREE_GENEIOUS type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_GENEIOUS/doc/example
Html Web Page
IQTREE_GENEIOUS type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_GENEIOUS/doc/param
Html Web Page
IQTREE_GENEIOUS type
IQTREE_XSEDE_1_01_01
IQTREE v.1.6.1, Efficient phylogenomic software by maximum likelihood, run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_1_01_01
tool
IQTREE_XSEDE_1_01_01
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_1_01_01/doc/pise
Pise XML
IQTREE_XSEDE_1_01_01 pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_1_01_01/doc/portal2
Html Web Page
IQTREE_XSEDE_1_01_01 type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_1_01_01/doc/example
Html Web Page
IQTREE_XSEDE_1_01_01 type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_1_01_01/doc/param
Html Web Page
IQTREE_XSEDE_1_01_01 type
IQTREE_XSEDE_EXPANSE
IQTree v.2.1.2 Efficient phylogenomic software by maximum likelihood, run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_EXPANSE
tool
IQTREE_XSEDE_EXPANSE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_EXPANSE/doc/pise
Pise XML
IQTREE_XSEDE_EXPANSE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_EXPANSE/doc/portal2
Html Web Page
IQTREE_XSEDE_EXPANSE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_EXPANSE/doc/example
Html Web Page
IQTREE_XSEDE_EXPANSE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/IQTREE_XSEDE_EXPANSE/doc/param
Html Web Page
IQTREE_XSEDE_EXPANSE type
JMODELTEST2_XSEDE
jMODELTEST2 v2.1.6: Statistical selection of best-fit models of nucleotide subtitution
http://cipresrest.sdsc.edu/cipresrest/v1/tool/JMODELTEST2_XSEDE
tool
JMODELTEST2_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/JMODELTEST2_XSEDE/doc/pise
Pise XML
JMODELTEST2_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/JMODELTEST2_XSEDE/doc/portal2
Html Web Page
JMODELTEST2_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/JMODELTEST2_XSEDE/doc/example
Html Web Page
JMODELTEST2_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/JMODELTEST2_XSEDE/doc/param
Html Web Page
JMODELTEST2_XSEDE type
LOGCOMBINER
LOGCOMBINER v1.8.4 - 2.6.3. The LogCombiner utility from the BEAST Package.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/LOGCOMBINER
tool
LOGCOMBINER
http://cipresrest.sdsc.edu/cipresrest/v1/tool/LOGCOMBINER/doc/pise
Pise XML
LOGCOMBINER pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/LOGCOMBINER/doc/portal2
Html Web Page
LOGCOMBINER type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/LOGCOMBINER/doc/example
Html Web Page
LOGCOMBINER type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/LOGCOMBINER/doc/param
Html Web Page
LOGCOMBINER type
MAFFT_TG
MAFFT v7.471: Multiple sequence alignment based on fast Fourier transform on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_TG
tool
MAFFT_TG
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_TG/doc/pise
Pise XML
MAFFT_TG pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_TG/doc/portal2
Html Web Page
MAFFT_TG type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_TG/doc/example
Html Web Page
MAFFT_TG type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_TG/doc/param
Html Web Page
MAFFT_TG type
MAFFT_XSEDE
MAFFT v7.505: Multiple sequence alignment based on fast Fourier transform on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_XSEDE
tool
MAFFT_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_XSEDE/doc/pise
Pise XML
MAFFT_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_XSEDE/doc/portal2
Html Web Page
MAFFT_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_XSEDE/doc/example
Html Web Page
MAFFT_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MAFFT_XSEDE/doc/param
Html Web Page
MAFFT_XSEDE type
METASPADES_METAMARC_XSEDE
Metaspades/Metamarc workflow v3.13.0.Metaspades Metamarc workflow: Using HMMs to find Antibiotic Resistance Genes
http://cipresrest.sdsc.edu/cipresrest/v1/tool/METASPADES_METAMARC_XSEDE
tool
METASPADES_METAMARC_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/METASPADES_METAMARC_XSEDE/doc/pise
Pise XML
METASPADES_METAMARC_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/METASPADES_METAMARC_XSEDE/doc/portal2
Html Web Page
METASPADES_METAMARC_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/METASPADES_METAMARC_XSEDE/doc/example
Html Web Page
METASPADES_METAMARC_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/METASPADES_METAMARC_XSEDE/doc/param
Html Web Page
METASPADES_METAMARC_XSEDE type
MIGRATEN_XSEDE
Migrate-N v4.4.4: Estimation of Population Sizes and Gene Flow using the Coalescent
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MIGRATEN_XSEDE
tool
MIGRATEN_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MIGRATEN_XSEDE/doc/pise
Pise XML
MIGRATEN_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MIGRATEN_XSEDE/doc/portal2
Html Web Page
MIGRATEN_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MIGRATEN_XSEDE/doc/example
Html Web Page
MIGRATEN_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MIGRATEN_XSEDE/doc/param
Html Web Page
MIGRATEN_XSEDE type
MODELTEST_NG_XSEDE
MODELEST-NG v.0.1.5 Statistical selection of best-fit models of nucleotide and protein subtitution
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MODELTEST_NG_XSEDE
tool
MODELTEST_NG_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MODELTEST_NG_XSEDE/doc/pise
Pise XML
MODELTEST_NG_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MODELTEST_NG_XSEDE/doc/portal2
Html Web Page
MODELTEST_NG_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MODELTEST_NG_XSEDE/doc/example
Html Web Page
MODELTEST_NG_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MODELTEST_NG_XSEDE/doc/param
Html Web Page
MODELTEST_NG_XSEDE type
MPBOOT_XSEDE
Statistical selection of best-fit models of nucleotide and protein subtitution
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MPBOOT_XSEDE
tool
MPBOOT_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MPBOOT_XSEDE/doc/pise
Pise XML
MPBOOT_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MPBOOT_XSEDE/doc/portal2
Html Web Page
MPBOOT_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MPBOOT_XSEDE/doc/example
Html Web Page
MPBOOT_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MPBOOT_XSEDE/doc/param
Html Web Page
MPBOOT_XSEDE type
MRBAYES_RESTART_XSEDE
MrBayes v3.2.7 Restart: Tree inference using Bayesian analysis - run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_RESTART_XSEDE
tool
MRBAYES_RESTART_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_RESTART_XSEDE/doc/pise
Pise XML
MRBAYES_RESTART_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_RESTART_XSEDE/doc/portal2
Html Web Page
MRBAYES_RESTART_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_RESTART_XSEDE/doc/example
Html Web Page
MRBAYES_RESTART_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_RESTART_XSEDE/doc/param
Html Web Page
MRBAYES_RESTART_XSEDE type
MRBAYES_XSEDE
MrBayes v3.2.7: Tree inference using Bayesian analysis run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_XSEDE
tool
MRBAYES_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_XSEDE/doc/pise
Pise XML
MRBAYES_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_XSEDE/doc/portal2
Html Web Page
MRBAYES_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_XSEDE/doc/example
Html Web Page
MRBAYES_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MRBAYES_XSEDE/doc/param
Html Web Page
MRBAYES_XSEDE type
MUSCLE
MUSCLE v3.7: Create multiple alignments from sequences or profiles
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE
tool
MUSCLE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE/doc/pise
Pise XML
MUSCLE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE/doc/portal2
Html Web Page
MUSCLE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE/doc/example
Html Web Page
MUSCLE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE/doc/param
Html Web Page
MUSCLE type
MUSCLE_PARALLEL_XSEDE
MUSCLE v5.0: Create multiple alignments from sequences or profiles
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE_PARALLEL_XSEDE
tool
MUSCLE_PARALLEL_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE_PARALLEL_XSEDE/doc/pise
Pise XML
MUSCLE_PARALLEL_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE_PARALLEL_XSEDE/doc/portal2
Html Web Page
MUSCLE_PARALLEL_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE_PARALLEL_XSEDE/doc/example
Html Web Page
MUSCLE_PARALLEL_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/MUSCLE_PARALLEL_XSEDE/doc/param
Html Web Page
MUSCLE_PARALLEL_XSEDE type
NCLCONVERTER
NCLCONVERTER: Interconvert a number of phylogenetic tool formats
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NCLCONVERTER
tool
NCLCONVERTER
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NCLCONVERTER/doc/pise
Pise XML
NCLCONVERTER pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NCLCONVERTER/doc/portal2
Html Web Page
NCLCONVERTER type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NCLCONVERTER/doc/example
Html Web Page
NCLCONVERTER type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NCLCONVERTER/doc/param
Html Web Page
NCLCONVERTER type
NOISY_XSEDE
Noisy v.1.5.12. Identify homo-plastic characters in multiple sequence alignments
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NOISY_XSEDE
tool
NOISY_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NOISY_XSEDE/doc/pise
Pise XML
NOISY_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NOISY_XSEDE/doc/portal2
Html Web Page
NOISY_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NOISY_XSEDE/doc/example
Html Web Page
NOISY_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/NOISY_XSEDE/doc/param
Html Web Page
NOISY_XSEDE type
PARALLELSTRUCTURE_XSEDE
ParallelStructure v.2.3.4. Population structure using multi-locus genotype data.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PARALLELSTRUCTURE_XSEDE
tool
PARALLELSTRUCTURE_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PARALLELSTRUCTURE_XSEDE/doc/pise
Pise XML
PARALLELSTRUCTURE_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PARALLELSTRUCTURE_XSEDE/doc/portal2
Html Web Page
PARALLELSTRUCTURE_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PARALLELSTRUCTURE_XSEDE/doc/example
Html Web Page
PARALLELSTRUCTURE_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PARALLELSTRUCTURE_XSEDE/doc/param
Html Web Page
PARALLELSTRUCTURE_XSEDE type
PAUPRAT
PAUPrat: PAUP analyses using the Nixon ratchet
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUPRAT
tool
PAUPRAT
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUPRAT/doc/pise
Pise XML
PAUPRAT pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUPRAT/doc/portal2
Html Web Page
PAUPRAT type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUPRAT/doc/example
Html Web Page
PAUPRAT type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUPRAT/doc/param
Html Web Page
PAUPRAT type
PAUP_XSEDE
PAUP v.4.a168 Phylogeneitc Analysis using parsimony.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUP_XSEDE
tool
PAUP_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUP_XSEDE/doc/pise
Pise XML
PAUP_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUP_XSEDE/doc/portal2
Html Web Page
PAUP_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUP_XSEDE/doc/example
Html Web Page
PAUP_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PAUP_XSEDE/doc/param
Html Web Page
PAUP_XSEDE type
PHMMER_XSEDE
PHMMER v3.3.2. Biological sequence analysis using profile hidden Markov models
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHMMER_XSEDE
tool
PHMMER_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHMMER_XSEDE/doc/pise
Pise XML
PHMMER_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHMMER_XSEDE/doc/portal2
Html Web Page
PHMMER_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHMMER_XSEDE/doc/example
Html Web Page
PHMMER_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHMMER_XSEDE/doc/param
Html Web Page
PHMMER_XSEDE type
PHYLOBAYES_XSEDE
PhyloBayes: Phylogenetic reconstruction using infinite mixtures
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE
tool
PHYLOBAYES_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE/doc/pise
Pise XML
PHYLOBAYES_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE/doc/portal2
Html Web Page
PHYLOBAYES_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE/doc/example
Html Web Page
PHYLOBAYES_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE/doc/param
Html Web Page
PHYLOBAYES_XSEDE type
PHYLOBAYES_XSEDE_RESTART
PhyloBayes Restart: Phylogenetic reconstruction using infinite mixtures
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE_RESTART
tool
PHYLOBAYES_XSEDE_RESTART
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE_RESTART/doc/pise
Pise XML
PHYLOBAYES_XSEDE_RESTART pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE_RESTART/doc/portal2
Html Web Page
PHYLOBAYES_XSEDE_RESTART type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE_RESTART/doc/example
Html Web Page
PHYLOBAYES_XSEDE_RESTART type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PHYLOBAYES_XSEDE_RESTART/doc/param
Html Web Page
PHYLOBAYES_XSEDE_RESTART type
PICARD_XSEDE
PICARD v.2.3.0 A tool for manipulating Illumina NGS data.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PICARD_XSEDE
tool
PICARD_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PICARD_XSEDE/doc/pise
Pise XML
PICARD_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PICARD_XSEDE/doc/portal2
Html Web Page
PICARD_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PICARD_XSEDE/doc/example
Html Web Page
PICARD_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PICARD_XSEDE/doc/param
Html Web Page
PICARD_XSEDE type
POY
POY v4.1.2: Iterative sequence alignment and tree inference
http://cipresrest.sdsc.edu/cipresrest/v1/tool/POY
tool
POY
http://cipresrest.sdsc.edu/cipresrest/v1/tool/POY/doc/pise
Pise XML
POY pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/POY/doc/portal2
Html Web Page
POY type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/POY/doc/example
Html Web Page
POY type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/POY/doc/param
Html Web Page
POY type
PREQUAL_XSEDE
PRE-alignment QUALity appraisal of sequence data.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PREQUAL_XSEDE
tool
PREQUAL_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PREQUAL_XSEDE/doc/pise
Pise XML
PREQUAL_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PREQUAL_XSEDE/doc/portal2
Html Web Page
PREQUAL_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PREQUAL_XSEDE/doc/example
Html Web Page
PREQUAL_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PREQUAL_XSEDE/doc/param
Html Web Page
PREQUAL_XSEDE type
PROBALIGN
PROBALIGN v1.3: Create multiple alignments from nucleic acid or protein sequences
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBALIGN
tool
PROBALIGN
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBALIGN/doc/pise
Pise XML
PROBALIGN pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBALIGN/doc/portal2
Html Web Page
PROBALIGN type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBALIGN/doc/example
Html Web Page
PROBALIGN type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBALIGN/doc/param
Html Web Page
PROBALIGN type
PROBCONS
PROBCONS v1.12: PROBabilistic CONSistency-based multiple alignment of amino/nucleic acid sequences
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBCONS
tool
PROBCONS
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBCONS/doc/pise
Pise XML
PROBCONS pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBCONS/doc/portal2
Html Web Page
PROBCONS type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBCONS/doc/example
Html Web Page
PROBCONS type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROBCONS/doc/param
Html Web Page
PROBCONS type
PROCESSRADTAGS_XSEDE
ProcessRadTags v1.44 Process Radtags on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROCESSRADTAGS_XSEDE
tool
PROCESSRADTAGS_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROCESSRADTAGS_XSEDE/doc/pise
Pise XML
PROCESSRADTAGS_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROCESSRADTAGS_XSEDE/doc/portal2
Html Web Page
PROCESSRADTAGS_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROCESSRADTAGS_XSEDE/doc/example
Html Web Page
PROCESSRADTAGS_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/PROCESSRADTAGS_XSEDE/doc/param
Html Web Page
PROCESSRADTAGS_XSEDE type
RAXMLHPC2BB
RAxML v8.1.12 Black Box: Simplified interface for RAxML with rapid bootstrapping run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2BB
tool
RAXMLHPC2BB
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2BB/doc/pise
Pise XML
RAXMLHPC2BB pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2BB/doc/portal2
Html Web Page
RAXMLHPC2BB type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2BB/doc/example
Html Web Page
RAXMLHPC2BB type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2BB/doc/param
Html Web Page
RAXMLHPC2BB type
RAXMLHPC2_TGB
RAxMLHPC v8.1.12: Legacy Interface for Tree inference with rapid bootstrapping run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_TGB
tool
RAXMLHPC2_TGB
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_TGB/doc/pise
Pise XML
RAXMLHPC2_TGB pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_TGB/doc/portal2
Html Web Page
RAXMLHPC2_TGB type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_TGB/doc/example
Html Web Page
RAXMLHPC2_TGB type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_TGB/doc/param
Html Web Page
RAXMLHPC2_TGB type
RAXMLHPC2_WORKFLOW
RAxMLHPC v8.1.12 Workflow: Multistep RAxML workflows on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_WORKFLOW
tool
RAXMLHPC2_WORKFLOW
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_WORKFLOW/doc/pise
Pise XML
RAXMLHPC2_WORKFLOW pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_WORKFLOW/doc/portal2
Html Web Page
RAXMLHPC2_WORKFLOW type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_WORKFLOW/doc/example
Html Web Page
RAXMLHPC2_WORKFLOW type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC2_WORKFLOW/doc/param
Html Web Page
RAXMLHPC2_WORKFLOW type
RAXMLHPC8_REST_XSEDE
RAxMLHPC v8.1.24: Tree inference with rapid bootstrapping run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC8_REST_XSEDE
tool
RAXMLHPC8_REST_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC8_REST_XSEDE/doc/pise
Pise XML
RAXMLHPC8_REST_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC8_REST_XSEDE/doc/portal2
Html Web Page
RAXMLHPC8_REST_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC8_REST_XSEDE/doc/example
Html Web Page
RAXMLHPC8_REST_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLHPC8_REST_XSEDE/doc/param
Html Web Page
RAXMLHPC8_REST_XSEDE type
RAXMLNG_XSEDE
RAxMLHPC v.1.0.1: Tree inference with rapid bootstrapping run on XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLNG_XSEDE
tool
RAXMLNG_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLNG_XSEDE/doc/pise
Pise XML
RAXMLNG_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLNG_XSEDE/doc/portal2
Html Web Page
RAXMLNG_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLNG_XSEDE/doc/example
Html Web Page
RAXMLNG_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/RAXMLNG_XSEDE/doc/param
Html Web Page
RAXMLNG_XSEDE type
READSEQ
READSEQ v2.2: Interconvert a number of sequence formats
http://cipresrest.sdsc.edu/cipresrest/v1/tool/READSEQ
tool
READSEQ
http://cipresrest.sdsc.edu/cipresrest/v1/tool/READSEQ/doc/pise
Pise XML
READSEQ pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/READSEQ/doc/portal2
Html Web Page
READSEQ type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/READSEQ/doc/example
Html Web Page
READSEQ type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/READSEQ/doc/param
Html Web Page
READSEQ type
SEQBOOT
SEQBOOT v3.66: Bootstrap, jackknife, or permutation resampling (Phylip)
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SEQBOOT
tool
SEQBOOT
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SEQBOOT/doc/pise
Pise XML
SEQBOOT pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SEQBOOT/doc/portal2
Html Web Page
SEQBOOT type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SEQBOOT/doc/example
Html Web Page
SEQBOOT type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SEQBOOT/doc/param
Html Web Page
SEQBOOT type
SPADES_ACCESS
SPAdes 3.13.0 for de novo genome assembly
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SPADES_ACCESS
tool
SPADES_ACCESS
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SPADES_ACCESS/doc/pise
Pise XML
SPADES_ACCESS pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SPADES_ACCESS/doc/portal2
Html Web Page
SPADES_ACCESS type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SPADES_ACCESS/doc/example
Html Web Page
SPADES_ACCESS type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/SPADES_ACCESS/doc/param
Html Web Page
SPADES_ACCESS type
STACKS_XSEDE
Phylogenomics
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STACKS_XSEDE
tool
STACKS_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STACKS_XSEDE/doc/pise
Pise XML
STACKS_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STACKS_XSEDE/doc/portal2
Html Web Page
STACKS_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STACKS_XSEDE/doc/example
Html Web Page
STACKS_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STACKS_XSEDE/doc/param
Html Web Page
STACKS_XSEDE type
STATALIGN_ACCESS
STATALIGN v3.4: Bayesian Tree Inference using both Substitution and Indel information
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STATALIGN_ACCESS
tool
STATALIGN_ACCESS
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STATALIGN_ACCESS/doc/pise
Pise XML
STATALIGN_ACCESS pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STATALIGN_ACCESS/doc/portal2
Html Web Page
STATALIGN_ACCESS type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STATALIGN_ACCESS/doc/example
Html Web Page
STATALIGN_ACCESS type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/STATALIGN_ACCESS/doc/param
Html Web Page
STATALIGN_ACCESS type
TREEANNOTATOR
TREEANNOTATOR v.1.8.4-2.6.3. The TreeAnnotator utility from the BEAST Package.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TREEANNOTATOR
tool
TREEANNOTATOR
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TREEANNOTATOR/doc/pise
Pise XML
TREEANNOTATOR pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TREEANNOTATOR/doc/portal2
Html Web Page
TREEANNOTATOR type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TREEANNOTATOR/doc/example
Html Web Page
TREEANNOTATOR type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TREEANNOTATOR/doc/param
Html Web Page
TREEANNOTATOR type
TRIMAL_XSEDE
TRIMAL v.1.2.59 Trim sequence alignments.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMAL_XSEDE
tool
TRIMAL_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMAL_XSEDE/doc/pise
Pise XML
TRIMAL_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMAL_XSEDE/doc/portal2
Html Web Page
TRIMAL_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMAL_XSEDE/doc/example
Html Web Page
TRIMAL_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMAL_XSEDE/doc/param
Html Web Page
TRIMAL_XSEDE type
TRIMMOMATIC_XSEDE
Trimmomatic v.0.36 A flexible read trimming tool for Illumina NGS data.
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMMOMATIC_XSEDE
tool
TRIMMOMATIC_XSEDE
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMMOMATIC_XSEDE/doc/pise
Pise XML
TRIMMOMATIC_XSEDE pise
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMMOMATIC_XSEDE/doc/portal2
Html Web Page
TRIMMOMATIC_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMMOMATIC_XSEDE/doc/example
Html Web Page
TRIMMOMATIC_XSEDE type
http://cipresrest.sdsc.edu/cipresrest/v1/tool/TRIMMOMATIC_XSEDE/doc/param
Html Web Page
TRIMMOMATIC_XSEDE type